PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G006900.1
Common NameB456_012G006900, LOC105779266
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 278aa    MW: 30462.2 Da    PI: 8.02
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G006900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00062113135123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++F++   L  H  +H
  Gorai.012G006900.1 113 YECKTCNRTFPSFQALGGHRASH 135
                         99**********99999998887 PP

2zf-C2H213.50.00022172194123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F++   L  H+r+H
  Gorai.012G006900.1 172 HECSICGAEFTSGQALGGHMRRH 194
                         78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.4E-13112137IPR007087Zinc finger, C2H2
SuperFamilySSF576675.57E-9112135No hitNo description
PROSITE profilePS5015710.637113140IPR007087Zinc finger, C2H2
SMARTSM003550.052113135IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576675.57E-9167194No hitNo description
Gene3DG3DSA:3.30.160.602.0E-4170196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.1E-13171196IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.346172199IPR007087Zinc finger, C2H2
SMARTSM003550.01172194IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDVVAMGSRH HTNVVKGKRT KRSRPQSPIP FAILCNNGGE VLDGIGNSCS SSSFEYQDST  60
TEEEEDMANC LILLAQGKSR ESPKDMLVYK KFASRKFLET PSNGTGKVGY YVYECKTCNR  120
TFPSFQALGG HRASHKKPKA TLSEVAMVEA AYEEQGPNYN NNNNSKVKVK VHECSICGAE  180
FTSGQALGGH MRRHRGSIGN HVNVLTTNTT LSLTVPMALE SEKPKKPPNV LSLSLDLNLP  240
APEDDHRESE FTFASTQQQQ QQSPLVFSAS TLVDCHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458484.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A0D2VTX80.0A0A0D2VTX8_G
STRINGGLYMA20G33480.19e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-65C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]